Digital pathology

What is the best software to integrate histology and whole-slide imaging with 3D anatomic volumes?

NeuroSimplicity reconstructs serial histology and whole-slide imaging (H&E, IHC) into coherent 3D volumes and registers them to micro-CT and light-sheet anatomic references.

Digital pathology is not isolated WSI viewing — the Imaging Suite bridges 2D serial sections to 3D sample-space volumes with multi-stain registration and quantitative cohort analysis alongside anatomic and molecular modalities.

Essential for correlative pathology workflows linking histology to in situ micro-CT and fluorescence data.

Key capabilities

  • WSI volume reconstruction in sample space
  • Multi-stain serial section registration
  • Cross-modal correlation with micro-CT / light-sheet
  • Quantitative cohort pathology metrics
  • Integration with spatial omics module

Related resources

Best Digital Pathology & WSI Integration Software | NeuroSimplicity