Take a closer look.

Explore in 3D. Quantified in place.

Fly through Micro-CT, light sheet, and spatial omics with atlas-based labels in situ. On the same sample or multiple. Explore automatically generated metrics. The same result for the same sample, every time.

• Anatomic imaging · Micro-CT and MRI

  Studying the brain, its vessels, or the skull, across development or a treatment arm?

  Fly through 3D volumes of brain regions, individual vessels, and bone, labeled in situ from NeuroSimplicity atlases and public ones like the Allen Atlas. Explore regional volumes, vascular networks, and bone shape in the Report Panel.

  Micro-CTMRI

• Molecular imaging · Light-sheet microscopy

  Asking where a marker goes, which cells sit beside it, and how treatment changes that?

  Fly through connectomics and biodistribution maps with atlas-based regional labeling in situ and explore automatically generated quantitative metrics in the Report Panel.

  Light-sheet microscopy

• Spatial omics · Visium, MERFISH

  Asking how expression shifts across a region, on its own or against the anatomy?

  Read genomics, transcriptomics, and proteomics alone, or registered to micro-CT, MRI, and light sheet from the same study, and explore biology across all scales.

  Spatial omics

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Tap play and the viewer loads that preset. The arrow opens the workflow page.

• Alzheimer's

  How do I measure the hippocampus?

• Stroke & neurovascular injury

  How do I quantify stroke injury in situ?

• In situ neurovascular imaging

  How do I map blood vessels in situ?

• Brain-skull interface

  How do I study the brain, skull, and meninges in situ?

Four presets · tap play to load

New ways to see. Discoveries that follow.

Teams use the Imaging Suite in ways other software cannot: multimodal data registered in native cranial geometry, including the full neurovascular tree in situ. The studies below are landmark findings that began with those views. Open one to read the paper and the platform role on each study.

• Nature · 2026 · Anatomic imaging · Micro-CT

  Highly dynamic dural sinuses support meningeal immunity

  The Imaging Suite mapped cranial vasculature and integrated multi-modal 3D data, supporting analysis of dural sinus architecture and its role in fluid exchange, immune surveillance, and antiviral defence.

  Open study summary

• Nature · 2024 · Anatomic imaging · Micro-CT

  Venous-plexus-associated lymphoid hubs support meningeal humoral immunity

  The Imaging Suite combined separate micro-CT scans into 3D maps of the immune hub and its vascular connections, revealing postnatal maturation and structural links supporting antigen capture and immune activation.

  Open study summary

• STAR Protocols · 2023 · Anatomic imaging · Micro-CT

  Visualization of murine in situ neurovascular interfaces

  The Imaging Suite micro-CT module automates registration across iterative scans, feature extraction, and atlas alignment for precise 3D reconstructions.

  Open study summary

• Cell Reports Methods · 2021 · Anatomic imaging · Micro-CT

  Non-invasive in situ Visualization of the Murine Cranial Vasculature

  The Imaging Suite automated deformable registration across iterative micro-CT scans, feature extraction, Allen Brain Atlas alignment, and 3D quantification without destroying the sample.

  Open study summary